neat.PhysTree.set_physiology

PhysTree.set_physiology(*args, **kwargs)

Set specifice membrane capacitance, axial resistance and (optionally) static point-like shunt conductances in the tree. Capacitance is stored at each node as the attribute ‘c_m’ (uF/cm2) and axial resistance as the attribute ‘r_a’ (MOhm*cm)

Parameters:

• c_m_distr (float, dict or float -> float()) – specific membrance capacitance

• r_a_distr (float, dict or float -> float()) – axial resistance

• g_s_distr (float, dict, float -> float() or None (optional, default) – is None) point like shunt conductances (placed at (node.index, 1.) for the nodes in node_arg). By default no shunt conductances are added

• node_arg (optional) – see documentation of MorphTree.convert_node_arg_to_nodes(). Defaults to None