neat.CompartmentFitter.fit_capacitance

CompartmentFitter.fit_capacitance(fit_arg, inds=[0], check_fit=True, force_tau_m_fit=False, pprint=False, pplot=False)[source]

Fit the capacitances of the model to the largest SOV time scale

Parameters:

  • fit_arg (see docstring of CompartmentFitter.convert_fit_args()) – Specifying the fit that is being performed.

  • inds (list of int (optional, defaults to [0])) – indices of eigenmodes used in the fit. Default is [0], indicating the largest eigenmode

  • check_fit (bool (optional, default True)) – Check whether the largest eigenmode of the reduced model is within tolerance of the largest eigenmode of the full tree. If not, capacitances are set to mach membrane time scale

  • force_tau_m_fit (bool (optional, default False)) – force capacitance fit through membrance time scale matching

  • pprint (bool (optional, defaults to False)) – whether to print information

  • pplot (bool (optional, defaults to False)) – whether to plot the eigenmode timescales

Returns:

  • neat.CompartmentTree – The compartmenttree that is in the process of being fitted.

  • list of <neat.MorphLoc> – The corresponding list of fit locations.