neat.CompartmentFitter.fit_syn_rescale

CompartmentFitter.fit_syn_rescale(c_loc_arg, s_loc_arg, comp_inds, g_syns, e_revs, fit_impedance=False, channel_names=None)[source]

Computes the rescaled conductances when synapses are moved to compartment locations, assuming a given average conductance for each synapse.

Parameters:

  • c_loc_arg (list of locations or string (see documentation of) – MorphTree.convert_loc_arg_to_locs() for details) The compartment locations

  • s_loc_arg (list of locations or string (see documentation of) – MorphTree.convert_loc_arg_to_locs() for details) The synapse locations

  • comp_inds (list or numpy.array of ints) – for each location in [s_loc_arg], gives the index of the compartment location in [c_loc_arg] to which the synapse is assigned

  • g_syns (list or numpy.array of floats) – The average conductances for each synapse

  • e_revs (list or numpy.array of floats) – The reversal potential of each synapse

  • fit_impdedance (bool (optional, default False)) – Whether to also use the reproduction of the rescaled impedance matrix as target.

  • channel_names (list of str or None (default)) – List of ion channels to be included in impedance matrix calculation. None includes all ion channels

Returns:

g_resc – The rescale values for the synaptic weights

Return type:

numpy.array of floats