neat.EquilibriumTree.calc_e_eq

EquilibriumTree.calc_e_eq(loc_arg, ions=None, method='interp', L_eps=50.0, pprint=False, **kwargs)[source]

Calculates equilibrium potentials and concentrations in the tree.

Uses either linear interpolations between the stored equilibria at the midpoints of the nodes or computes the equilibria through a NEURON simulation without inputs.

Parameters:

  • loc_arg (list of locations or string) – if list of locations, specifies the locations for which the equilibrium state evaluated, if string, specifies the name under which a set of locations is stored

  • ions (iterable of `str) – the names of the ions for which the concentration needs to be measured

  • method (Literal: 'interp' or 'sim') – whether to use interpolation or simulation. Defaults to simulation if distance is larger than L_eps

  • L_eps (float) – maximum distance (um) above which the method defaults to interpolation

  • pprint (bool) – Whether or not to print additional information