neat.EquilibriumTree.set_e_eq

EquilibriumTree.set_e_eq(ions=None, t_max=500.0, dt=0.1, factor_lambda=10.0, pprint=False)[source]

Set equilibrium potentials and concentrations in the tree. Computes the equilibria through a NEURON simulation without inputs.

Parameters:

  • ions (list of `str) – the names of the ions for which the concentration needs to be measured

  • t_max (float) – duration of the simulation

  • dt (float) – time-step of the simulation

  • factor_lambda (float) – multiplies the number of compartments suggested by the lambda-rule