neat.CompartmentFitter.plotKernels¶

CompartmentFitter.
plotKernels
(alphas=None, phimat=None, t_arr=None, recompute=False, pprint=False)[source]¶ Plots the impedance kernels. The kernel at the position i,j represents the transfer impedance kernel between compartments i and j.
 Parameters
alphas (np.array) – The exponential coefficients, as follows from the SOV expansion
phimat (np.ndarray (dim=2)) – The matrix to compute the exponential prefactors, as follows from the SOV expansion
t_arr (np.array) – The timepoints at which the to be plotted kernels are evaluated. Default is
np.linspace(0.,200.,int(1e3))
recompute (bool) – Force recomputing the SOV expansion if
True
(only if alphas or phimat areNone
)pprint (bool) – Is verbose if
True
 Returns
k_orig (list of list of neat.Kernel) – The kernels of the full model
k_comp (list of list of neat.Kernel) – The kernels of the reduced model