neat.MorphTree.createNewTree

MorphTree.createNewTree(*args, **kwargs)

Creates a new tree where the locs of a given ‘name’ are now the nodes. Distance relations between locations are maintained (note that this relation is stored in L attribute of neat.MorphNode, using the p3d attribute containing the 3d coordinates does not maintain distances)

Parameters

• name (string) – the name under which the locations are stored that should be used to create the new tree

• fake_soma (bool (default False)) – if True, finds the common root of the set of locations and uses that as the soma of the new tree. If False, the real soma is used.

• store_loc_inds (bool (default False)) – store the index of each location in the content attribute of the new node (under the key ‘loc ind’)

Returns

The new tree.

Return type

neat.MorphTree