neat.CompartmentFitter.fitModel

CompartmentFitter.fitModel(loc_arg, alpha_inds=[0], use_all_channels_for_passive=True, recompute=False, pprint=False, parallel=False)[source]

Runs the full fit for a set of locations (the location are automatically extended with the bifurcation locs)

Parameters

  • loc_arg (list of locations or string (see documentation of) – MorphTree._convertLocArgToLocs() for details) The compartment locations

  • alpha_inds (list of ints) – Indices of all mode time-scales to be included in the fit

  • use_all_channels_for_passive (bool (optional, default True)) – Uses all channels in the tree to compute coupling conductances

  • recompute (bool) – whether to force recomputing the impedances

  • pprint (bool) – whether to print information

  • parallel (bool) – whether the models are evaluated in parallel

Returns

The reduced tree containing the fitted parameters

Return type

neat.CompartmentTree