neat.CompartmentFitter.setCTree

CompartmentFitter.setCTree(loc_arg, extend_w_bifurc=True)

Store an initial neat.CompartmentTree, providing a tree structure scaffold for the fit for a given set of locations. The locations are also stored on self.tree under the name ‘fit locs’

Parameters

• loc_arg (list of locations or string (see documentation of) – MorphTree._convertLocArgToLocs() for details) The compartment locations

• extend_w_bifurc (bool (optional, default True)) – To extend the compartment locations with all intermediate bifurcations (see documentation of MorphTree.extendWithBifurcationLocs()).